Welcome to Cellsnake’s Documentation!#
Cellsnake is a command line tool designed for easy and scalable single-cell analysis. It can be used as a Snakemake workflow or as a standalone command line tool.
It is build on Seurat4 but Seurat5 version is coming soon!
Our main repository location: sinanugur/cellsnake
Our Snakemake workflow location: sinanugur/scrna-workflow